VLSCI: Systems Administrator – High Performance Computing, Storage & Infrastructure

Please note: enquiry and application information at the URL below, no agencies please!

Executive summary

Want to work with hundreds of TB of storage, HPC clusters and a Blue Gene supercomputer and have an aptitude for storage and data ?

http://jobs.unimelb.edu.au/jobDetails.asp?sJobIDs=624151

Background

To give you an idea of what this job relates to, VLSCI currently has in production:

  • 136 node, 1088 core SGI cluster (Intel Nehalem CPUs)
  • ~110TB usable of Panasas storage

Shortly arriving (< 1 month away):

  • 2048 node, 8192 core IBM Blue Gene/P supercomputer
  • 80 node, 640 core IBM iDataplex cluster (Intel Nehalem CPUs)
  • ~300TB usable of IBM GPFS storage plus tape libraries
  • 2012 – more! 😉

    Both Intel clusters are CentOS 5, the front end and service nodes for the Blue Gene are SuSE SLES 10. The GPFS servers are RHEL5. Panasas runs FreeBSD under the covers.
    Continue reading

Filter Senator Conroy (.org)

There’s a website now up called Filter-Conroy.org to persuade people in Victoria to vote below the line at the next federal election to sack Senator Conroy if he does not abandon his wrong-headed plans for mandatory ISP level censorship and waste valuable taxpayers funds (which could go to the police to fight paedophiles if the government really wanted to achieve something). I strongly commend this site to my fellow Victorian voters.

VLSCI Mid Year Call for Applications from Victorian Life Science Researchers

A quick work related blog..

Today VLSCI announced its mid-year Call For Applications for use of the Peak Computing Facility at the University of Melbourne by life science researchers in Victoria. This includes time on our forthcoming IBM Blue Gene/P HPC system as well as the existing SGI Altix XE HPC cluster and a forthcoming IBM iDataPlex HPC cluster (both Intel Nehalem systems).

Pass it on!

Australia/Survival Day

Today is the public holiday commonly called Australia Day but really it’s only a good day for those of us who arrived since last 1787, for those who came before it’s been a bit crap. OK, a lot crap. 🙁 So today instead of participating in the usual ritual of barbie and beer Donna and I went up to the Belgrave Survival Day event, celebrating the fact that we still have people from the oldest continual culture in the world around!

Belgrave Surival Day 2010

A nice day, we were a bit late in getting there so we missed the earlier talks and dances but we did get to hear some good indigenous bands play and had a wander around to look at the displays and talk to people. If you want to know a little more about why these things are important have a browse of the ANTAR website.

Joining the Australian Internet Blackout

Along with folks like the Samba project I’ve joined the Great Australian Internet Blackout, so the first time (and only the first time) you visit the site you’ll get the notice about the protest. Here’s why the proposed mandatory filtering is a bad idea from the Great Australian Internet Blackout website:

  • It won’t protect children: The filter isn’t a “cyber safety” measure to stop kids seeing inappropriate content such as R and X rated websites. It is not even designed to prevent the spread of illegal material where it is most often found (chat rooms, peer-to-peer file sharing).
  • We will all pay for this ineffective solution: Under this policy, ISPs will be forced to charge more for consumer and business broadband. Several hundred thousand dollars has already been spent to test the filter – without considering high-speed services such as the National Broadband Network!
  • A dangerous precedent: We stand to join a small club of countries which impose centralised Internet censorship such as China, Iran and Saudi Arabia. The secret blacklist may be limited to “Refused Classification” content for now, but what might a future Australian Government choose to block?

If you’re using WordPress with a theme that supports widgets then participating is as easy as adding a text widget (or using one you already have) and add the single line of HTML to activate the blackout.

To paraphrase Kryten from Red Dwarf, it has just two minor flaws. One, it won’t work, and two, it won’t work. Now I realise that, technically speaking, that’s only one flaw but I thought it was such a big one it was worth mentioning twice.

Moving from VPAC to VLSCI

After almost six and a half years working at VPAC it’s time to move on, in January I’ll be taking up the position of Senior Systems Administrator in the University of Melbourne for the Victorian Life Sciences Computational Initiative (VLSCI). For those who’ve not come across the VLSCI it describes itself thus:

Under the Victorian Life Sciences Computation Initiative, The University of Melbourne will host a $100 million supercomputing program and facility, with $50 million provided by the State Government. The goal of the initiative is for Victoria to retain its standing and enhance its leadership in world life sciences. This will lead to major improvements in public health outcomes in the areas such as cancer, cardiovascular and neurological disease, chronic inflammatory diseases, bone diseases and diabetes.

Their ambitions aren’t what you could call small, they want to be a supercomputing facility ranking in the top 5 in life sciences world-wide. It’s going to be a fun ride and a lot more than just going from a 4 letter acronym to a 5 letter one. 😉

I’ve really enjoyed my time at VPAC over the years and I’m really going to miss the people there, but it’s gotten to the point where I want to be able to focus on running large HPC systems without distraction and the opportunity at VLSCI was too good to ignore!

Tsunami Warning for South East Australia (updated – no impact)

Just got back from a talk Donna was doing to find that the BoM has issued a tsunami warning for Victoria after a large earthquake near New Zealand.

An undersea earthquake of magnitude 7.9 has occurred at 07:22 PM EST on Wednesday 15 July 2009 at 45.960S , 166.470E off W. COAST OF S. ISLAND, N.Z. Sea level observations have confirmed a tsunami has been generated.

ABC News says:

The weather bureau says there is a potential tsunami threat to New South Wales, Tasmania, Victoria, Norfolk Island and Lord Howe Island.

No risk to us, being well inland, but hopefully those nearer the coast will be OK.

Update: Well it was tiny – 774melbourne (ABC local radio) on Twitter reported:

774melbourne Correction: TV NZ reports the NZ wave was around 17cm.
774melbourne Observations of a very small Tsunami in Tas. No major land impact expected.

First Solo Photo Exhibition!

I’ve been doing photography for over half my life now (( there’s a scary thought! )) and after having my first ever exhibition jointly with Donna recently I’ve now ended up with my first solo exhibition!

I’ve got 5 large prints and 7 small ones (all framed limited editions) on view at the “Cafe Have Ya Bean” in Upwey, so please do come and see it. It’s a lovely place run by Terry and Liz, nice food and they do a great cappuccino! 🙂

Final report for “Inquiry into Improving Access to Victorian Public Sector Information and Data” released

The Victorian Government has been running an inquiry into access to the data that it generates, and they’ve finally tabled their report (PDF). I’ve only had a chance for a quick scan of it so far but its three main recommendations are as follows.

Firstly – this info should be made available and it should be cheap (ideally free!):

The Committee has proposed three key recommendations for access to and re-use of Government information. First, the Committee recommends that the Victorian Government develop an Information Management Framework for the purpose of facilitating access to and re-use of Victorian Government information by government, citizens and businesses. The default position of the framework should be that all PSI produced by Victorian Government departments from now on be made available at no or marginal cost.

Secondly – they should use Creative Commons licensing wherever possible!

The second key recommendation of the Committee is that the Victorian Government make use of the Creative Commons licensing model for the release of PSI. The Committee was told Creative Commons licences can be appropriately used for up to 85 per cent of government information and data, providing a simple to understand and widely used system for the re-use of PSI. Remaining Victorian Government PSI should either not be released, or released under licences tailored specifically for restricted materials.

Thirdly – and least excitingly – there should be a portal for this info..

The Committee’s third key recommendation is that the Victorian Government establish an on-line directory, where the public can search for and obtain information about PSI held by the Victorian Government. Depending on the access conditions Government has attached to specific PSI, people will be able to download information and data directly, or make contact with people in the Victorian Government to discuss access conditions.

They also have a recommendation and finding relating to state government purchasing of software related to open source:

The Committee also considers the use of open source software (OSS) within and by the Victorian Government. One of the Committee’s recommendations is that the Government ensure tendering for software is neither licence specific nor has proprietary software-specific requirements, and that it meet the given objectives of Government.

Finding 23: There is sufficient evidence of cost-competitiveness between open source software and proprietary software for government to carefully consider both options during software procurement and development.

They also consider the licensing of software developed by the government:

As noted in section 10.4.3.2 below, current Victorian Government policy is to allocate IP rights in software produced for it to the software developer, with certain restrictions to ensure the Government’s interests are protected. This means that there is nothing to restrict people who develop software for the government from subsequently releasing it as OSS.

Unfortunately it looks like MS Word stuffed up their references and headings for them – what irony! There is no section 10.4.3.2 in the PDF, it’s probably referring to section 10.3.3, which is followed by section 10.3.4 which in turn is followed by 10.3.3.1 – er ?

Even more interesting is when they talk about file formats:

Recommendation 42: That the Victorian Government require, as part of its whole-of-government ICT Procurement Policy, that software procured by the Government be capable of saving files in open standard formats, and that wherever possible, the software be configured to save in open standard formats by default.

There’s heaps more there, but I’ve run out of time to read it tonight! 🙂

(Found via OpenAustralia on Twitter)